Eurytemora affinis
Summary
| Type |
organism
|
|---|---|
| Genus |
Eurytemora
|
| Species |
affinis
|
| Genome Browser | |
| Description |
Eurytemora affinis is most commonly found to be between 1.2 - 1.3mm in length, where the females are typically around 1.1-1.5mm and males 1.0-1.5mm. Like any other copepod, their anatomy is broken down into two main sections: the prosome (main body) and urosome (tail). Source: https://en.wikipedia.org/wiki/Eurytemora_affinis Note that the previous version of the Eurytemora affinis genome was actually from a different species, Eurytemora carolleeae. Information about the previous assembly is organized under the Eurytemora carolleeae project page, https://i5k.nal.usda.gov/organism/836560. |
| Publication |
Du Z, Wirtz J, Zhou YJ, Jenstead A, Opgenorth T, Puls A, Meyer C, Gelembiuk GW, Lee CE. Genome architecture evolution in an invasive copepod species complex. Nature communications. 2025 Nov 21; 16(1):10312.
|
| Organism Image |
|
| Image Credit |
5431135-WEB.jpg by Jeff Cordell, Bugwood.org licensed under a Creative Commons Attribution-Noncommercial 3.0 License. |
Assembly Stats
| Contig N50 |
750.9 kb |
|---|---|
| GC Content |
33.5% |
| Scaffold N50 |
42.6 Mb |
Other Information
| Community Contact |
Carol Lee, University of Wisconsin-Madison |
|---|---|
| Links |
Analyses
| Name | Program | Status Sort descending |
|---|---|---|
| Eurytemora affinis genome assembly ASM5291489v1 (GCA_052914895.1) | NextDenovo v. 2.3.1; NextPolish v. 1.4.1; Purge_dups v. 1.2.6; Juicer v. 1.6; 3D-DNA v. 180922; Juicebox v. 1.91 | Current |
| Functional annotation of Eurytemora affinis ASM5291489v1 GSv1.0 | AgBase functional annotation pipeline | Current |
| Eurytemora affinis ASM5291489v1 GSv1.0 | MAKER | Current |