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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Organism
  2. Drosophila Takahashii

Drosophila takahashii

Summary
Type
organism
Genus
Drosophila
Species
takahashii
Description

Drosophila takahashii is a species of flies in the family vinegar flies. They are diurnal.

Source:https://eol.org/pages/768774(link is external)

Genome update. Previously, the i5k Workspace@NAL hosted Drosophila takahashii genome assembly Dtak_2.0 (GCF_000224235.1), NCBI Drosophila takahashii Annotation Release 101, and Annotation v0.5.3 of the Drosophila takahashii assembly using Maker (Baylor College of Medicine) as part of the Drosophila modENCODE project. The assembly and annotations have been updated to the most recent assembly, GCF_018152695.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_018152695.1(link is external)), and annotations, NCBI Drosophila takahashii Annotation Release 102 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Drosophila_takahashii/102/(link is external)).
Organism Image
Image Credit
Nicolas Gompel. View Source.(link is external) CC BY-NC-SA 3.0(link is external)
Assembly Stats
Contig N50
125250
GC Content
40.15
Scaffold N50
387609
Analyses
Name Program
Drosophila takahashii genome assembly ASM1815269v1 (GCF_018152695.1) Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23
Drosophila takahashii genome assembly Dtak_2.0 (GCF_000224235.1) Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0
NCBI Drosophila takahashii Annotation Release 102 NCBI Eukaryotic Genome Annotation Pipeline
NCBI Drosophila takahashii Annotation Release 101 NCBI Eukaryotic Genome Annotation Pipeline
Annotation v0.5.3 of the Drosophila takahashii assembly using Maker (Baylor College of Medicine) Maker
Functional annotation of NCBI Drosophila takahashii Annotation Release 102 AgBase functional annotation pipeline
Whole Genome Assembly of Drosophila takahashii provided by the Baylor College of Medicine Baylor College of Medicine genome assembly pipeline