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U.S. Department of Agriculture
  1. Organism
  2. Drosophila Takahashii

Drosophila takahashii

Summary
Type
organism
Genus
Drosophila
Species
takahashii
Genome Browser
JBrowse Viewer for Drosophila takahashii
Description

Drosophila takahashii is a species of flies in the family vinegar flies. They are diurnal.

Source:https://eol.org/pages/768774

 
Publication
Leung W, Torosin N, Cao W, Reed LK, Arrigo C, Elgin SCR, Ellison CE. Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae. G3 (Bethesda, Md.). 2023 Sep 30; 13(10).
Organism Image
Image of Drosophila takahashii
Image Credit

Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Assembly Stats
Contig N50

16.6 Mb
GC Content

39.5%
Scaffold N50

39.7 Mb
Other Information
Links
Drosophila takahashii @ Baylor College of Medicine
NCBI BioProject
Download Data
Analyses
Name Program Status
NCBI Drosophila takahashii Annotation Release GCF_030179915.1-RS_2024_12 NCBI Eukaryotic Genome Annotation Pipeline Current
Drosophila takahashii genome assembly ASM1815269v1 (GCF_018152695.1) Flye v. 2.6; Racon v. 1.4.12; Medaka v. 0.9.1; Pilon v. 1.23 Current
NCBI Drosophila takahashii Annotation Release 102 NCBI Eukaryotic Genome Annotation Pipeline Current
Functional annotation of NCBI Drosophila takahashii Annotation Release 102 AgBase functional annotation pipeline Current
Drosophila takahashii genome assembly DtakHiC1v2 (GCF_030179915.1) Canu v. 2.1; Flye v. 2.8.1; quickmerge v. 0.3; 3D-DNA v. 180419 Current
Functional annotation of NCBI Drosophila takahashii Annotation Release GCF_030179915.1-RS_2024_12 AgBase functional annotation pipeline Current
Drosophila takahashii genome assembly Dtak_2.0 (GCF_000224235.1) Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 Supressed
NCBI Drosophila takahashii Annotation Release 101 NCBI Eukaryotic Genome Annotation Pipeline Supressed
Annotation v0.5.3 of the Drosophila takahashii assembly using Maker (Baylor College of Medicine) Maker Supressed
Whole Genome Assembly of Drosophila takahashii provided by the Baylor College of Medicine Baylor College of Medicine genome assembly pipeline Supressed