Centruroides sculpturatus
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Overview
 Provides appropriate phylogenetic sampling across diversity of class Arachnida. Data were generated by the Baylor College of Medicine's i5k pilot project. If you use the data from this project in your research, please cite the following publication: Community contact: Organism Image
 Feature Summary
The following features are currently present for this organism
NULL Contig N50
5173 Scaffold N50
342549 Number Of Genes
30465 Community Contact
Community Contact: Prashant Sharma|psharma37@wisc.edu Image Credit
<a href="https://en.wikipedia.org/wiki/User:Musides">Musides.</a> <a href="http://commons.wikimedia.org/wiki/File:Bbasgen-scorpion-front.jpg">View Source.</a> <a href="https://creativecommons.org/licenses/by-sa/3.0/deed.en">CC-BY-SA-3.0</a> |
Assembly Information
| Analysis Name | Whole genome assembly of Centruroides sculpturatus |
|---|---|
| Software | Baylor College of Medicine genome assembly pipeline (NA) |
| Source | Centruroides sculpturatus genome assembly Cscul.scaffolds.50.fa |
| Date performed | 2014-01-29 |
| Materials & Methods | Sequence generation for assembly. For this project we are generating fairly high coverage in a number of different insert sized libraries. The assembly strategy is based around a seed allpaths assembly (the Broad Allpaths assembler) followed by seed assembly improvement using homegrown tools, Atlas-link and Atlas-GapFill, which can significantly improve the results. Thus we generate sequence data to enable the Allpaths assembly. As of Nov 2011 this is: - 40X genome coverage in 180bp insert library (100bp reads forward and reverse); and 40X 3kb insert data. To enable better scaffolding and local gap filling we additionally generate 500bp, 1kb, 2kb, and 8kb insert sizes at > 20X coverage. Source: Baylor College of Medicine i5K Project Summary |
Statistics
| Assembly Metrics | |
| Contig N50 | 5173 |
|---|---|
| Scaffold N50 | 342549 |
| GC Content | 30.59 |
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