Centruroides sculpturatus

Overview

Provides appropriate phylogenetic sampling across diversity of class Arachnida.

Data were generated by the Baylor College of Medicine's i5k pilot project.

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Organism Image
Feature Summary
The following features are currently present for this organism
Feature TypeCount
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NULL

Contig N50
5173
Scaffold N50
342549
Number Of Genes
30465
Community Contact
Community Contact: 
Prashant Sharma|psharma37@wisc.edu
Image Credit
<a href="https://en.wikipedia.org/wiki/User:Musides">Musides.</a> <a href="http://commons.wikimedia.org/wiki/File:Bbasgen-scorpion-front.jpg">View Source.</a> <a href="https://creativecommons.org/licenses/by-sa/3.0/deed.en">CC-BY-SA-3.0</a>

Assembly Information

Analysis Name Whole genome assembly of Centruroides sculpturatus
Software Baylor College of Medicine genome assembly pipeline (NA)
Source Centruroides sculpturatus genome assembly Cscul.scaffolds.50.fa
Date performed 2014-01-29
Materials & Methods

Sequence generation for assembly. For this project we are generating fairly high coverage in a number of different insert sized libraries. The assembly strategy is based around a seed allpaths assembly (the Broad Allpaths assembler) followed by seed assembly improvement using homegrown tools, Atlas-link and Atlas-GapFill, which can significantly improve the results. Thus we generate sequence data to enable the Allpaths assembly. As of Nov 2011 this is: - 40X genome coverage in 180bp insert library (100bp reads forward and reverse); and 40X 3kb insert data. To enable better scaffolding and local gap filling we additionally generate 500bp, 1kb, 2kb, and 8kb insert sizes at > 20X coverage.


Source: Baylor College of Medicine i5K Project Summary

Statistics

Assembly Metrics
Contig N50 5173
Scaffold N50 342549
GC Content 30.59