Diaphorina citri

Overview

Organism information:

The Asian citrus psyllid, Diaphorina citri, is a sap-sucking, hemipteran bug in the family, Psyllidae. It is an important pest of citrus, as it is one of only two confirmed vectors of the serious citrus disease, Huanglongbing or greening disease (Lallemand, J., A. Fos, and J. M. Bové. 1986. Transmission de la bacterie associé à la forme africaine de la maladie du “greening” par le psylle asiatique Diaphorina citri Kuwayama. Fruits 41: 341-343.)

It is widely distributed in southern Asia and has spread to other citrus growing regions.

Source: English Wikipedia Species Pages

License: CC-BY-SA 3.0

Genome information:

The Diaphorina citri genome is co-hosted at https://citrusgreening.org/. Currently, all manual annotation is conducted there. For more information, go to https://citrusgreening.org/annotation/index.

Diaphorina citri currently has two assembly versions available at the i5k Workspace@NAL: diaci1.1, which was generated by the Baylor College of Medicine, and NCBI-diaci1.1, which is the NCBI GenBank- and RefSeq-processed version of diaci1.1.

Annotations were computed separately on both assemblies: MAKER2 was run on diaci1.1, and the NCBI Gnomon pipeline was run on NCBI-diaci1.1, which was subsequently added to RefSeq (NCBI Diaphorina citri Annotation Release 100).

The Web Apollo manual curation tool and JBrowse genome browser are available for the NCBI datasets only. Blast is available for both datasets.

Assembly statistics and annotation information below are listed for the most recent datasets: Assembly NCBI-diaci1.1, and NCBI Diaphorina citri Annotation Release 100.

Community contact:

Image Credit: David Hall, USDA-ARS. CCBY-NC license. View Source
Organism Image
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS18,242
mRNA24,777
Gene18,242
Contig N50
NA
Scaffold N50
109898
Number Of Genes
22786
Community Contact
Community Contact: 
Wayne Hunter|Wayne.Hunter@ARS.USDA.GOV
Surya Saha|ss2489@cornell.edu
Image Credit
David Hall, USDA-ARS. <a href="http://creativecommons.org/licenses/by-nc/3.0/us/">CCBY-NC license.</a> <a href="http://www.insectimages.org/browse/detail.cfm?imgnum=5006083">View Source</a>

Assembly Information

Analysis Name Diaci psyllid genome assembly version 1.1
Software Velvet, PBJelly, followed by NCBI GenBank and RefSeq processing (NA)
Source diaci1.1
Date performed 2013-10-22
Materials & Methods For more information about this assembly version, see http://www.ncbi.nlm.nih.gov/assembly/GCF_000475195.1/

Statistics

Assembly Metrics
Contig N50 NA
Scaffold N50 109898
GC Content 38.11