Drosophila eugracilis

Overview

As part of the Drosophila modENCODE project, the Baylor College of Medicine is studying the comparative genomics of eight additional species of Drosophila: biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii.

Please cite the following publication when using the D. eugracilis genome and annotations:
Chen, Z. X., Sturgill, D., Qu, J., et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research, 2014, 24(7), 1209-1223. doi: 10.1101/gr.159384.113


Image Credit: Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Organism Image
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS59,158
mRNA14,530
Gene14,530
Contig N50
224386
Scaffold N50
976726
Number Of Genes
14530
Image Credit
Nicolas Gompel.</a> <a href="http://gompel.org/wp-content/gallery/drosophilidae/Drosophila-Sophophora-eugracilis-NCBSisoFline09_plate_small.jpg">View Source.</a> <a href="https://creativecommons.org/licenses/by-nc-sa/3.0/">CC BY-NC-SA 3.0</a>

Assembly Information

Analysis Name Whole Genome Assembly of Drosophila eugracilis provided by the Baylor College of Medicine
Software Baylor College of Medicine genome assembly pipeline
Source Drosophila eugracilis Deug05112011 assembly
Date performed 2013-07-30
Materials & Methods

From http://www.ncbi.nlm.nih.gov/nuccore/AFPQ00000000/:

This is an upgrade of the Deug_1.0 assembly using illumina reads to fix indels and other improvements using BWA, samtools etc. Not a traditional assembler.

Assembly Method:

Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0

Assembly Name: Deug_2.0

Genome Coverage: 218.1x

Sequencing Technology: 454; Illumina

Statistics

Assembly Metrics
Contig N50 224386
Scaffold N50 976726
GC Content 39.15