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i5k Workspace@NAL
U.S. Department of Agriculture

Functional annotation of BCM annotation of the Eurytemora affinis assembly using Maker and additional analyses

Summary
Summary
Resource Type
Gene Functional Annotation
Name
Functional annotation of BCM annotation of the Eurytemora affinis assembly using Maker and additional analyses
Description

The AgBase functional annotation pipeline provides Gene Ontology annotations via the GOAnna and InterProScan software packages, as well as KEGG annotations via the KOBAS software, for protein sets hosted by the i5k Workspace@NAL.

A full description of the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748

Instructions for running the functional annotation pipeline can be found here: https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html

Functional annotation files are available under https://i5k.nal.usda.gov/content/data-downloads
Program, Pipeline, Workflow or Method Name
AgBase functional annotation pipeline
Program Version
n/a
Organism
E. affinis (Calanoid copepod)
Data Source
Source Name
: EAFF.faa
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/euraff-%28Eurytemora_affinis%20complex%20%28Atlantic%20clade%29%29/BCM-After-Atlas/2.Official%20or%20Primary%20Gene%20Set/BCM_version_0.5.3/EAFF_BCM_version_0.5.3_functional_annotation/
Publication
Saha S, Cooksey AM, Childers AK, Poelchau MF, McCarthy FM. Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes.. Insects. 2021 Aug 19; 12(8).
Algorithm
Date Performed
Wednesday, September 30, 2020 - 14:59