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i5k Workspace@NAL
U.S. Department of Agriculture

Schistocerca serialis cubense

Summary
Analysis
Assembly Stats
Other Information
Summary
Resource Type
Organism
Genus
Schistocerca
Species
serialis cubense
Common Name
NA
Description

This genome project is a joint effort between the Behavioral Plasticity Research Institute (https://behavioralplasticity.org) and the Ag100Pest project (http://i5k.github.io/ag100pest).

This dataset is not published - please follow Toronto/Ft. Lauderdale conditions of data re-use.
Publication
Childers AK, Geib SM, Sim SB, Poelchau MF, Coates BS, Simmonds TJ, Scully ED, Smith TPL, Childers CP, Corpuz RL, Hackett K, Scheffler B. The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research.. Insects. 2021 Jul 09; 12(7).
Organism Image
Image Credit
Schistocerca_serialis_cubense.jpg by Brandon Woo
Analysis
NameProgramDate Constructed
NCBI Schistocerca serialis cubense Annotation Release 100NCBI Eukaryotic Genome Annotation PipelineAug 15th, 2022
Schistocerca serialis cubense genome assembly iqSchSeri2.2 (GCF_023864345.2)HiFiASM v. 0.15.4; 3D-DNA v. 210817; Juicebox Assembly Tools v. 1.11Jun 28th, 2022
Functional annotation of NCBI Schistocerca serialis cubense Annotation Release 100AgBase functional annotation pipelineAug 5th, 2022
Assembly Stats
Scaffold N50
849285246
GC Content
52.53
Other Information
Community Contact
Hojun Song, Texas A&M Universityy; Anna Childers, USDA-ARS; Olga Dudchenko, Baylor College of Medicine
Links
NCBI BioProject
DNA Zoo
Behavioral Plasticity Research Institute
Ag100Pest
Download data