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i5k Workspace@NAL
U.S. Department of Agriculture

Hyalella azteca annotations OGSv1.0

Summary
Summary
Resource Type
Genome Annotation
Name
Hyalella azteca annotations OGSv1.0
Program, Pipeline, Workflow or Method Name
MAKER2 and manual annotation
Program Version
NA
Data Source
Source Name
: Hyalella azteca genome assembly Hazt_2.0 (GCF_000764305.1)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/hyaazt-%28Hyalella_azteca%29/Hazt_2.0/1.Genome%20Assembly/Hazt_2.0/
Organism
H. azteca (NA)
Publication
Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, Robertson HM, Feyereisen R, Mechler-Hickson A, Mathers N, Lee CE, Colbourne JK, Biales A, Johnston JS, Wellborn GA, Rosendale AJ, Cridge AG, Munoz-Torres MC, Bain PA, Manny AR, Major KM, Lambert FN, Vulpe CD, Tuck P, Blalock BJ, Lin YY, Smith ME, Ochoa-Acuña H, Chen MM, Childers CP, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Gibbs RA, Richards S. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.. Environmental science & technology. 2018 05 15; 52(10):6009-6022.
Description

The Hyalella azteca genome was sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Hyalella azteca research community manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The OGS is an integration of automatic gene predictions from Maker with manual annotations by the research community (via the Apollo manual annotation software).

Protein pages for the Official Gene Set can be accessed at NCBI: https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein_wgs&from_u...

The full dataset (OGSv1.0) is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1415995
Cross Reference
Ag Data Commons