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i5k Workspace@NAL
U.S. Department of Agriculture

Onthophagus taurus community annotations

Summary
Summary
Resource Type
Genome Annotation
Name
Onthophagus taurus community annotations
Program, Pipeline, Workflow or Method Name
Manual annotation, LiftOff v1.6.3, GFF3toolkit v2.1.0
Program Version
n/a
Data Source
Source Name
: Onthophagus taurus genome assembly Otau_2.0 (GCF_000648695.1)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/onttau-%28Onthophagus_taurus%29/Otau_2.0/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/Otau_2.0-manual-annotations-v2024/
Organism
O. taurus (Bull-headed Dung beetle)
Description

Onthophagus taurus community annotators performed manual annotation updates on Onthophagus taurus Genome Assembly 1.0 (10.15482/USDA.ADC/1255156) via the Apollo2 software (https://github.com/gmod/apollo) at the i5k Workspace@NAL (https://i5k.nal.usda.gov). These annotations were reviewed by the i5k Workspace@NAL and lifted over to assembly Otau_2.0 (GCF_000648695.1) via LiftOff (https://github.com/agshumate/Liftoff). Overlaps with RefSeq annotations were computed using gff3_merge (https://github.com/NAL-i5K/GFF3toolkit). Fasta sequences were generated using gff3_to_fasta (https//github.com/NAL-i5K/GFF3toolkit).