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i5k Workspace@NAL
U.S. Department of Agriculture

Eufriesea mexicana Official Gene Set v1.3

Summary
Summary
Resource Type
Genome Annotation
Name
Eufriesea mexicana Official Gene Set v1.3
Program, Pipeline, Workflow or Method Name
Augustus, GlimmerHMM, SNAP, TBLASTN, GLEAN, LiftOff
Program Version
NA
Data Source
Source Name
: Eufriesea mexicana genome assembly ASM148370v2 (GCF_001483705.2)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/eufmex-%28Eufriesea_mexicana%29/ASM148370v1/2.Official%20or%20Primary%20Gene%20Set/Eufriesea_mexicana_v1.2/
Organism
E. mexicana
Publication
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG, Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living.. Science (New York, N.Y.). 2015 Jun 05; 348(6239):1139-43.
Description

This Official Gene Set is an update to Official Gene Set v1.2 (https://i5k.nal.usda.gov/bio_data/1394585). The i5k Workspace@NAL updated Eufriesea mexicana Official Gene Set v1.2 to the coordinate system for the NCBI RefSeq genome GCF_001483705.2, using the LiftOff software (https://github.com/agshumate/Liftoff/releases/tag/1.6.3). This resulted in Eufriesea mexicana Official Gene Set v1.3.