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i5k Workspace@NAL
U.S. Department of Agriculture

Functional annotation of NCBI Apis mellifera Annotation Release 104

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Summary
Summary
Resource Type
Gene Functional Annotation
Name
Functional annotation of NCBI Apis mellifera Annotation Release 104
Description

The AgBase functional annotation pipeline provides Gene Ontology annotations via the GOAnna and InterProScan software packages, as well as KEGG annotations via the KOBAS software, for protein sets hosted by the i5k Workspace@NAL.

A full description of the functional annotation pipeline can be found here: https://www.mdpi.com/2075-4450/12/8/748

Instructions for running the functional annotation pipeline can be found here: https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html

Functional annotation files are available under https://i5k.nal.usda.gov/content/data-downloads
Program, Pipeline, Workflow or Method Name
AgBase functional annotation pipeline
Program Version
NA
Organism
A. mellifera (honey bee)
Data Source
Source Name
: GCF_003254395.2_Amel_HAv3.1_protein.faa
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/apimel-%28Apis_mellifera%29/Amel_HAv3.1/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/
Publication
There are no publications associated with this record.
Algorithm
Date Performed
Friday, March 29, 2024 - 11:39