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i5k Workspace@NAL
U.S. Department of Agriculture

Euglossa dilemma annotations v1.0

Summary
Summary
Resource Type
Genome Annotation
Name
Euglossa dilemma annotations v1.0
Program, Pipeline, Workflow or Method Name
Augustus 3.2.2, exonerate v2.42.1, tblastn, SNAP
Program Version
NA
Data Source
Source Name
: Euglossa dilemma genome assembly Edil_v1.0 (GCA_002201625.1/NIGJ01)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/eugdil-%28Euglossa_dilemma%29/NIJG01/2.Official%20or%20Primary%20Gene%20Set/
Organism
E. dilemma (Euglossa dilemma)
Publication
Brand P, Saleh N, Pan H, Li C, Kapheim KM, Ramírez SR. The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma.. G3 (Bethesda, Md.). 2017 09 07; 7(9):2891-2898.
Description

The annotation is a combination of homology-based approach using blast and exonerate and de novo gene predictions using AUGUSTUS and SNAP. Other methods include: SNAP,tblastn-exonerate

For more information, or to cite, please see the following publication:
The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma
Philipp Brand, Nicholas Saleh, Hailin Pan, Cai Li, Karen M. Kapheim and Santiago R. Ramírez
G3: Genes, Genomes, Genetics Early online July 12, 2017; https://doi.org/10.1534/g3.117.043687