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U.S. Department of Agriculture

Rhipicephalus microplus genome assembly Rmi v2.0 (GCA_002176555.1)

Summary
Summary
Resource Type
Genome Assembly
Name
Rhipicephalus microplus genome assembly Rmi v2.0 (GCA_002176555.1)
Program, Pipeline, Workflow or Method Name
SOAPdenovo v. MAY-2015; Ray v. MAY-2015; Cap3 v. JUNE-2015; PBJelly v. NOVEMBER-2015; CANU v. DECEMBER-2015
Program Version
NA
Data Source
Source Name
: SAMN04492774
Source URI
: https://www.ncbi.nlm.nih.gov/biosample/SAMN04492774/
Organism
R . microplus (southern cattle tick)
Publication
  1. Guerrero FD, Moolhuijzen P, Peterson DG, Bidwell S, Caler E, Bellgard M, Nene VM, Djikeng A. Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus.. BMC genomics. 2010 Jun 11; 11:374.
  2. McCooke JK, Guerrero FD, Barrero RA, Black M, Hunter A, Bell C, Schilkey F, Miller RJ, Bellgard MI. The mitochondrial genome of a Texas outbreak strain of the cattle tick, Rhipicephalus (Boophilus) microplus, derived from whole genome sequencing Pacific Biosciences and Illumina reads.. Gene. 2015 Oct 15; 571(1):135-41.
  3. Barrero RA, Guerrero FD, Black M, McCooke J, Chapman B, Schilkey F, Pérez de León AA, Miller RJ, Bruns S, Dobry J, Mikhaylenko G, Stormo K, Bell C, Tao Q, Bogden R, Moolhuijzen PM, Hunter A, Bellgard MI. Gene-enriched draft genome of the cattle tick Rhipicephalus microplus: assembly by the hybrid Pacific Biosciences/Illumina approach enabled analysis of the highly repetitive genome.. International journal for parasitology. 2017 08; 47(9):569-583.
Cross Reference
NCBI Assembly