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i5k Workspace@NAL
U.S. Department of Agriculture

Leptinotarsa decemlineata annotations lepdec_OGSv1.1

Summary
Summary
Resource Type
Genome Annotation
Name
Leptinotarsa decemlineata annotations lepdec_OGSv1.1
Program, Pipeline, Workflow or Method Name
MAKER2, manual annotation, GFF3toolkit
Program Version
NA
Data Source
Source Name
: Whole genome assembly of Leptinotarsa decemlineata
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/lepdec-%28Leptinotarsa_decemlineata%29/BCM-After-Atlas/2.Official%20or%20Primary%20Gene%20Set/
Organism
L. decemlineata (Colorado potato beetle)
Publication
Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, Engsontia P, Friedrich M, García-Robles I, Gibbs RA, Goswami C, Grapputo A, Gruden K, Grynberg M, Henrissat B, Jennings EC, Jones JW, Kalsi M, Khan SA, Kumar A, Li F, Lombard V, Ma X, Martynov A, Miller NJ, Mitchell RF, Munoz-Torres M, Muszewska A, Oppert B, Palli SR, Panfilio KA, Pauchet Y, Perkin LC, Petek M, Poelchau MF, Record É, Rinehart JP, Robertson HM, Rosendale AJ, Ruiz-Arroyo VM, Smagghe G, Szendrei Z, Thomas GWC, Torson AS, Vargas Jentzsch IM, Weirauch MT, Yates AD, Yocum GD, Yoon JS, Richards S. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).. Scientific reports. 2018 01 31; 8(1):1931.
Description

A MAKER2 gene set (https://i5k.nal.usda.gov/bio_data/836581) was merged with Apollo-curated manual annotations and miRNA annotations using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit/).