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i5k Workspace@NAL
U.S. Department of Agriculture

Microplitis demolitor Official Gene Set micdem_OGSv1.0

Summary
Summary
Resource Type
Genome Annotation
Name
Microplitis demolitor Official Gene Set micdem_OGSv1.0
Program, Pipeline, Workflow or Method Name
i5k Workspace OGS generation pipeline
Program Version
n/a
Data Source
Source Name
: Microplitis demolitor genome assembly Mdem2 (GCF_000572035.2)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/micdem-%28Microplitis_demolitor%29/GCF_000572035.2/
Organism
Microplitis demolitor
Description

The Microplitis demolitor Official Gene Set (OGS) v1.0 is an integration of automatic gene predictions from Microplitis demolitor genome annotations NCBI-RefSeq's gene set NCBI Microplitis demolitor Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Microplitis_demolitor/101/), with manual annotations by the research community, performed via the Apollo manual curation software (https://zenodo.org/record/1295754#.YDgLyJNKivg). Manual annotations were QC'd via the GFF3toolkit (https://github.com/NAL-i5K/gff3toolkit) and NCBI's table2asn_GFF software (https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2asn_GFF/), and merged with NCBIMicroplitis demolitorAnnotation Release 101 via the GFF3toolkit (https://github.com/NAL-i5K/gff3toolkit).

Protein pages for the manual annotations can be accessed at NCBI: https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein_wgs&from_u...

The full dataset is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1521095