Medauroidea extradentata

Overview

The Vietnamese walking stick is an invasive species native to Vietnam. This project produced a draft genome of this species for use as a model system in the study of plant cell wall breakdown by endogenously produced insect enzymes. As obligate leaf feeders who lack symbiotic microbes, the stick insects are ideally suited to this task.

Publication status: Published, please cite doi:10.1534/g3.118.200204

Community contact:

Image Credit: By Drägüs (Own work) [CC BY-SA 3.0], via Wikimedia Commons
Feature Summary
The following features are currently present for this organism
Feature TypeCount
There are no feature counts to report. If you have loaded features for this organism then re-populate the organism_feature_count materialized view.
Organism Image
Contig N50
NA
Scaffold N50
43047
Community Contact
Community Contact: 
Brian R Johnson|brnjohnson@ucdavis.edu
Image Credit
By Drägüs (Own work) [<a href="https://creativecommons.org/licenses/by-sa/3.0">CC BY-SA 3.0</a>], <a href="https://commons.wikimedia.org/wiki/File%3AMedauroidea_extradentata-different_colored_females.jpg">via Wikimedia Commons</a>

Assembly Information

Analysis Name Medauroidea extradentata genome assembly ASM301236v1 (GCA_003012365.1)
Software DISCOVAR denovo (1.0)
Source SAMN06282392
Date performed 2018-03-20
Materials & Methods

Publication status: Published, please cite doi:10.1534/g3.118.200204

Sequencing methods:

- 250 base pair paired end sequencing was conducted on the Illumina Hiseq 2500.

Assembly methods:

- DISCOVAR v1, default parameters 

- Redundans v1, default parameters

- Agouti v1, default parameters

Statistics

Assembly Metrics
Contig N50 NA
Scaffold N50 43047
GC Content 37.58