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i5k Workspace@NAL
U.S. Department of Agriculture

New Ag100Pest genomes available: Diprion similis, Neodiprion fabricii, Neodiprion pinetum, and Neodiprion virginiana

Submitted by siteadmin on Tue, 04/05/2022 - 18:46

Four new organisms from the Ag100Pest project (http://i5k.github.io/ag100pest) are available at the i5k Workspace.

New organisms:

  • Diprion similis: genome assembly iyDipSimi1.1 (GCF_021155765.1) and NCBI annotation release 100
  • Neodiprion fabricii genome assembly iyNeoFabr1.1 (GCF_021155785.1) and NCBI annotation release 100
  • Neodiprion pinetum: genome assembly  iyNeoPine1.1 (GCF_021155775.1) and NCBI annotation release 100
  • Neodiprion virginiana: genome assembly iyNeoVirg1.1 (GCF_021901495.1) and NCBI annotation release 100

New organism and dataset pages (https://i5k.nal.usda.gov/); browsers with mapped RNA-Seq (https://i5k.nal.usda.gov/available-genome-browsers); file downloads, including functional annotations (https://i5k.nal.usda.gov/content/data-downloads); and BLAST databases (https://i5k.nal.usda.gov/webapp/blast) are available. Apollo registration for all organisms can be accessed at https://i5k.nal.usda.gov/web-apollo-registration

Please let us know if you notice any issues!