We have added new mapped RNA-Seq to 32 of our genome browsers! To learn more about our RNA-Seq mapping pipeline:
- visit the GitHub repository: https://github.com/NAL-i5K/NAL_RNA_seq_annotation_pipeline
- View slides from our presentation on the pipeline: https://i5k.nal.usda.gov/sites/default/files/presentations/i5k-workspace-webinar-5-25-2021.pdf
The following organisms now have new, mapped RNA-Seq on their genome browsers (https://i5k.nal.usda.gov/available-genome-browsers):
Amyelois transitella
Bactrocera dorsalis
Bemisia tabacia
Bombus terrestris
Cephus cinctus
Clitarchus hookeri
Contarinia nasturtii
Diaphorina citri
Drosophila biarmipes
Dufourea novaeangliae
Ephemera danica
Eufriesea mexicana
Euglossa dilemma
Fopius arisanus
Frankliniella occidentalis
Galleria mellonella
Halyomorpha halys
Heliothis virescens
Holacanthella duospinosa
Hyalella azteca
Lasioglossum albipes
Leptinotarsa decemlineata
Medauroidea extradentata
Megachile rotundata
Melipona quadrifasciata
Microplitis demolitor
Nicrophorus vespilloides
Osmia lignaria
Tribolium castaneum
Varroa jacobsoni
Varroa destructor
Bactrocera (Zeugodacus) cucurbitae