Athalia rosae

Overview

No genome information of primitive hymenoptera (Symphyta, sawfly) is available vs higher suborder (Apocrita, Apis, Nasonia etc.). This species is a hymenopteran model maintained in laboratory through year.

Tools such that transgenesis, systemic RNAi, artificial egg activation, artificial fertilization by cryopreserved sperm injection, etc. are established.

DNA from a single haploid male (10-15 microgram/male) and from haploid offspring from a single mother (30-50 males) are available anytime.

Data were generated by the Baylor College of Medicine's i5k pilot project.

View the Baylor College of Medicine's data sharing policy.

Community contact:

Image Credit: Sanja565658. View Source. CC-BY-SA-3.0
Organism Image
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Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS80,576
mRNA11,894
Gene11,894
Contig N50
51418
Scaffold N50
1366867
Number Of Genes
10784
Community Contact
Community Contact: 
Masatsugu Hatakeyama|sawfly@affrc.go.jp
Image Credit
Sanja565658. <a href="https://commons.wikimedia.org/wiki/File:Athalia_rosae_01.JPG">View Source.</a> <a href="https://creativecommons.org/licenses/by-sa/3.0/deed.en">CC-BY-SA-3.0</a>

Assembly Information

Analysis Name Whole genome assembly of Athalia rosae
Software Baylor College of Medicine genome assembly pipeline (NA)
Source Athalia rosae Aros01112013 assembly
Date performed 2013-07-16
Materials & Methods

Sequence generation for assembly. For this project we are generating fairly high coverage in a number of different insert sized libraries. The assembly strategy is based around a seed allpaths assembly (the Broad Allpaths assembler) followed by seed assembly improvement using homegrown tools, Atlas-link and Atlas-GapFill, which can significantly improve the results. Thus we generate sequence data to enable the Allpaths assembly. As of Nov 2011 this is: - 40X genome coverage in 180bp insert library (100bp reads forward and reverse); and 40X 3kb insert data. To enable better scaffolding and local gap filling we additionally generate 500bp, 1kb, 2kb, and 8kb insert sizes at > 20X coverage.


Source: Baylor College of Medicine i5K Project Summary

Statistics

Assembly Metrics
Contig N50 51418
Scaffold N50 1366867
GC Content 42.67