Drosophila biarmipes

Overview

As part of the Drosophila modENCODE project, the Baylor College of Medicine is studying the comparative genomics of eight additional species of Drosophila: biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii.

Please cite the following publication when using the D. biarmipes genome and annotations:
Chen, Z. X., Sturgill, D., Qu, J., et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research, 2014, 24(7), 1209-1223. doi: 10.1101/gr.159384.113


Organism Image
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Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS61,314
mRNA15,836
Gene15,836
Contig N50
436543
Scaffold N50
3129048
Number Of Genes
15836
Image Credit
<a href="http://obbard.bio.ed.ac.uk/photos.html">Obbardlab.</a> <a href="http://obbard.bio.ed.ac.uk/photo_gallery/Drosophila_biarmipes.html">View Source.</a> <a href="http://obbard.bio.ed.ac.uk/photos.html">View Copyright</a>

Assembly Information

Analysis Name Drosophila biarmipes genome assembly Dbia_2.0 (GCF_000233415.1)
Software Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 (NA)
Source BioSample SAMN00714466
Date performed 2013-03-04
Materials & Methods Chen, Z.X., Sturgill, D., Qu, J., Jiang, H., Park, S., Boley, N., Suzuki, A.M., Fletcher, A.R., Plachetzki, D.C., FitzGerald, P.C., et al. (2014). Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research 24, 1209-1223.

Statistics

Assembly Metrics
Contig N50 436543
Scaffold N50 3129048
GC Content 39.35