Drosophila rhopaloa

Overview

As part of the Drosophila modENCODE project, the Baylor College of Medicine is studying the comparative genomics of eight additional species of Drosophila: biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii.

Please cite the following publication when using the D. rhopaloa genome and annotations:
Chen, Z. X., Sturgill, D., Qu, J., et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome research, 2014, 24(7), 1209-1223. doi: 10.1101/gr.159384.113


Image Credit: Nicolas Gompel. View Source. CC BY-NC-SA 3.0
Organism Image
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS57,998
mRNA14,565
Gene14,565
Contig N50
19300
Scaffold N50
44904
Number Of Genes
14565
Image Credit
Nicolas Gompel. <a href="http://gompel.org/wp-content/gallery/drosophilidae/Drosophila-rhopaloa-KB866-male-1x10-dorsal-enhanced.jpg">View Source.</a> <a href="https://creativecommons.org/licenses/by-nc-sa/3.0/">CC BY-NC-SA 3.0</a>

Assembly Information

Analysis Name Drosophila rhopaloa genome assembly Drho_2.0 (GCF_000236305.1)
Software Celera Assembler v. 6.1; BWA v. 0.6.0; Samtools v. 0.1.14; GATK v. 1.1-9; Indel_call_and_upgrade.pl v. 1.0 (NA)
Source SAMN00715129
Date performed 2013-03-04
Materials & Methods Not available.

Statistics

Assembly Metrics
Contig N50 19300
Scaffold N50 44904
GC Content 39.21