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i5k Workspace@NAL
U.S. Department of Agriculture

Hyalella azteca annotations OGSv1.3

Summary
Summary
Resource Type
Genome Annotation
Name
Hyalella azteca annotations OGSv1.3
Program, Pipeline, Workflow or Method Name
Liftoff
Program Version
1.6.3
Data Source
Source Name
: Hyalella azteca genome assembly Hazt_2.0.2(GCF_000764305.2)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/hyaazt-%28Hyalella_azteca%29/Hazt_2.0.2/1.Genome%20Assembly/Hazt_2.0.2/
Organism
H. azteca (NA)
Publication
Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, Robertson HM, Feyereisen R, Mechler-Hickson A, Mathers N, Lee CE, Colbourne JK, Biales A, Johnston JS, Wellborn GA, Rosendale AJ, Cridge AG, Munoz-Torres MC, Bain PA, Manny AR, Major KM, Lambert FN, Vulpe CD, Tuck P, Blalock BJ, Lin YY, Smith ME, Ochoa-Acuña H, Chen MM, Childers CP, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Gibbs RA, Richards S. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.. Environmental science & technology. 2018 05 15; 52(10):6009-6022.
Description

Hyalella azteca Official Gene Set OGSv1.3 is an update to Official Gene Sets OGSv1.0 and OGSv1.2. Official Gene Set hyaazt_OGSv1.3 was generated by mapping hyaazt_OGSv1.2 (https://i5k.nal.usda.gov/bio_data/836772) to assembly GCF_000764305.2 using the program Liftoff v1.6.3 (https://github.com/agshumate/Liftoff).

Protein pages for the Official Gene Set can be accessed at NCBI: https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein_wgs&from_u...

The full dataset (OGSv1.0) is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1415995