An official website of the United States government.

The .gov means it’s official.
Federal government websites always use a .gov or .mil domain. Before sharing sensitive information online, make sure you’re on a .gov or .mil site by inspecting your browser’s address (or “location”) bar.

This site is also protected by an SSL (Secure Sockets Layer) certificate that’s been signed by the U.S. government. The https:// means all transmitted data is encrypted — in other words, any information or browsing history that you provide is transmitted securely.

i5k Workspace@NAL
U.S. Department of Agriculture

Hyalella azteca annotations OGSv1.3

Summary
Summary
Resource Type
Genome Annotation
Name
Hyalella azteca annotations OGSv1.3
Program, Pipeline, Workflow or Method Name
Liftoff
Program Version
1.6.3
Data Source
Source Name
: Hyalella azteca genome assembly Hazt_2.0.2(GCF_000764305.2)
Source URI
: https://i5k.nal.usda.gov/data/Arthropoda/hyaazt-%28Hyalella_azteca%29/Hazt_2.0.2/1.Genome%20Assembly/Hazt_2.0.2/
Organism
H. azteca
Publication
Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, Robertson HM, Feyereisen R, Mechler-Hickson A, Mathers N, Lee CE, Colbourne JK, Biales A, Johnston JS, Wellborn GA, Rosendale AJ, Cridge AG, Munoz-Torres MC, Bain PA, Manny AR, Major KM, Lambert FN, Vulpe CD, Tuck P, Blalock BJ, Lin YY, Smith ME, Ochoa-Acuña H, Chen MM, Childers CP, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Gibbs RA, Richards S. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.. Environmental science & technology. 2018 05 15; 52(10):6009-6022.
Description

Hyalella azteca Official Gene Set OGSv1.3 is an update to Official Gene Sets OGSv1.0 and OGSv1.2. Official Gene Set hyaazt_OGSv1.3 was generated by mapping hyaazt_OGSv1.2 (https://i5k.nal.usda.gov/bio_data/836772) to assembly GCF_000764305.2 using the program Liftoff v1.6.3 (https://github.com/agshumate/Liftoff(link is external)).

Protein pages for the Official Gene Set can be accessed at NCBI: https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein_wgs&from_u...(link is external)

The full dataset (OGSv1.0) is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1415995(link is external)