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i5k Workspace@NAL
U.S. Department of Agriculture

Athalia rosae

Summary
Analysis
Assembly Stats
Other Information
Summary
Resource Type
Organism
Genus
Athalia
Species
rosae
Common Name
Turnip sawfly
Description

No genome information of primitive hymenoptera (Symphyta, sawfly) is available vs higher suborder (Apocrita, Apis, Nasonia etc.). This species is a hymenopteran model maintained in laboratory through year.

Tools such that transgenesis, systemic RNAi, artificial egg activation, artificial fertilization by cryopreserved sperm injection, etc. are established.

DNA from a single haploid male (10-15 microgram/male) and from haploid offspring from a single mother (30-50 males) are available anytime.

Data were generated by the Baylor College of Medicine's i5k pilot project.

View the Baylor College of Medicine's data sharing policy.

Genome update. Previously, the i5k Workspace@NAL hosted Athalia rosae genome assembly Aros_2.0 (GCF_000344095.2), Athalia rosae annotations OGSv1.2, NCBI Athalia rosae Annotation Release 102 and Functional annotation of BCM annotation of the Athalia rosae assembly using Maker and additional analyses. The assembly and annotations have updated to the most recent assembly, Athalia rosae genome assembly iyAthRosa1.1 (GCF_917208135.1) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_917208135.1/), Athalia rosae annotations OGSv1.3 (https://i5k.nal.usda.gov/data/Arthropoda/athros-%28Athalia_rosae%29/iyAthRosa1.1/2.Official%20or%20Primary%20Gene%20Set/), NCBI Athalia rosae Annotation Release 103 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Athalia_rosae/103/), and Functional annotation of NCBI Athalia rosae Annotation Release 103 (https://i5k.nal.usda.gov/data/Arthropoda/athros-%28Athalia_rosae%29/iyAthRosa1.1/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/).
Publication
  1. Crowley LM, Broad GR, University of Oxford and Wytham Woods Genome Acquisition Lab, Natural History Museum Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Green A, Darwin Tree of Life Consortium. The genome sequence of the Turnip Sawfly, Athalia rosae (Linnaeus, 1758).. Wellcome open research. 2023; 8:87.
  2. Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dowling D, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grath S, Grimmelikhuijzen CJP, Große-Wilde E, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jacquin-Joly E, Jennings EC, Jones JW, Klasberg S, Lee SL, Lesný P, Lovegrove M, Martin S, Martynov AG, Mayer C, Montagné N, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Parisot N, Pauli T, Peters RS, Petersen M, Pick C, Persyn E, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, von Reumont BM, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Vedder L, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.. Genome biology and evolution. 2020 07 01; 12(7):1099-1188.
Organism Image
Image Credit
Sanja565658. View Source. CC-BY-SA-3.0
Analysis
NameProgramDate Constructed
Whole genome assembly of Athalia rosaeBaylor College of Medicine genome assembly pipelineJul 16th, 2013
BCM annotation of the Athalia rosae assembly using Maker and additional analysesMAKEROct 1st, 2013
Athalia rosae genome assembly Aros_2.0 (GCF_000344095.2)AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12cJan 3rd, 2018
NCBI Athalia rosae Annotation Release 102NCBI Eukaryotic annotation pipelineJul 17th, 2018
Athalia rosae annotations OGSv1.2remap-gff3Oct 1st, 2018
Functional annotation of BCM annotation of the Athalia rosae assembly using Maker and additional analysesAgBase functional annotation pipelineSep 30th, 2020
Athalia rosae genome assembly iyAthRosa1.1 (GCF_917208135.1)Hifiasm, purge_dups, FreeBayes, LongRanger, SALSA2, MitoHifi, gEVAL Oct 13th, 2021
NCBI Athalia rosae Annotation Release 103NCBI Eukaryotic Genome Annotation PipelineJun 12th, 2022
Athalia rosae annotations OGSv1.3remap-gff3Mar 26th, 2024
Functional annotation of NCBI Athalia rosae Annotation Release 103AgBase functional annotation pipelineMar 19th, 2024
Assembly Stats
Contig N50
NA
Scaffold N50
943070
GC Content
42.42
Other Information
Community Contact
Jan Philip Oeyen, University of Oslo
Links
Athalia rosae @ Baylor College of Medicine
NCBI BioProject
Download Data