An official website of the United States government.

The .gov means it’s official.
Federal government websites always use a .gov or .mil domain. Before sharing sensitive information online, make sure you’re on a .gov or .mil site by inspecting your browser’s address (or “location”) bar.

This site is also protected by an SSL (Secure Sockets Layer) certificate that’s been signed by the U.S. government. The https:// means all transmitted data is encrypted — in other words, any information or browsing history that you provide is transmitted securely.

Eufriesea mexicana

Summary
Resource Type
Organism
Genus
Eufriesea
Species
mexicana
Common Name
NA
Description

Eufriesea is a genus of euglossine bees. Like all orchid bees, they are restricted to the Neotropics. All species range from entirely to at least partially metallic (the face and/or tegulae), though much of the body in some species may be brown/black in color and hairy.

Source: https://en.wikipedia.org/wiki/Eufriesea

Please cite the following publication(s) when using this dataset:

Kapheim, Karen M., et al. "Genomic signatures of evolutionary transitions from solitary to group living." Science (2015): aaa4788.

Datasets were provided by BeeBase.

Genome update. Previously, the i5k Workspace@NAL hosted Eufriesea mexicana genome assembly ASM148370v1 (GCF_001483705.1), Eufriesea mexicana v1.1, NCBI Eufriesea mexicana Annotation Release 100 and Functional annotation of NCBI Eufriesea mexicana Annotation Release 100. The assembly and annotations have updated to the most recent assembly, Eufriesea mexicana genome assembly ASM148370v2 (GCF_001483705.2) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_001483705.2/), Eufriesea mexicana v1.3 (https://i5k.nal.usda.gov/data/Arthropoda/eufmex-%28Eufriesea_mexicana%29/ASM148370v2/2.Official%20or%20Primary%20Gene%20Set/Eufriesea_mexicana_Official_Gene_set_v1.3/), NCBI Eufriesea mexicana Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Eufriesea_mexicana/100/), and Functional annotation of NCBI Eufriesea mexicana Annotation Release 100 (https://i5k.nal.usda.gov/data/Arthropoda/eufmex-%28Eufriesea_mexicana%29/ASM148370v2/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/).

Publication
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG, Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living.. Science (New York, N.Y.). 2015 Jun 05; 348(6239):1139-43.
Organism Image
Image Credit
Cheryl Harleston. View source. CC BY-NC-SA 4.0
Analysis
NameProgramDate Constructed
Eufriesea mexicana genome assembly ASM148370v1 (GCF_001483705.1)SOAPdenovoMay 9th, 2016
NCBI Eufriesea mexicana Annotation Release 100NCBI Eukaryotic Genome Annotation PipelineAug 26th, 2016
Eufriesea mexicana Official Gene Set v1.1Augustus, GlimmerHMM, SNAP, TBLASTN, GLEANAug 29th, 2017
Functional annotation of NCBI Eufriesea mexicana Annotation Release 100AgBase functional annotation pipelineMar 13th, 2024
Eufriesea mexicana genome assembly ASM148370v2 (GCF_001483705.2) SOAPdenovoMay 9th, 2016
Eufriesea mexicana Official Gene Set v1.3Augustus, GlimmerHMM, SNAP, TBLASTN, GLEAN, LiftOffMar 14th, 2024
Eufriesea mexicana Official Gene Set v1.2Augustus, GlimmerHMM, SNAP, TBLASTN, GLEAN, coordinates_conversionSep 17th, 2018
Assembly Stats
Contig N50
NA
Scaffold N50
351926
GC Content
42.47
Other Information
Community Contact
Karen M. Kapheim, Utah State University; Hailin Pan, China National GeneBank
Links