News Archive

Our next i5k Workspace webinar will be February 16th at 1 pm MST.

Title: Manual annotation using the Apollo software

The webinar will last 1 hour, and will cover Apollo functionality for editing annotation structure:

• Adding and removing exons;
• Merging and splitting gene models;
• Adjusting UTRs;
• Adding isoforms based on RNA-Seq evidence;
• Changing the sequence start, stop, and open reading frame;
• Working with splice sites;
• Genome sequence alterations;
• Adding non-coding features.

Click this link to view the event in your time zone: https://www.timeanddate.com/worldclock/fixedtime.html?msg=I5k+Workspace+webinar&iso=20210216T13&p1=1947&ah=1

Connection details:

Join ZoomGov Meeting
https://www.zoomgov.com/j/1614399223?pwd=M2lhZklEMzgvaDhRZWxjd096ZXZTUT09

Meeting ID: 161 439 9223
Passcode: 898436

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+16692545252,,1614399223#,,,,*898436# US (San Jose)
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        +1 646 828 7666 US (New York)
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Meeting ID: 161 439 9223
Passcode: 898436

Find your local number: https://www.zoomgov.com/u/adSmW5XIFM

A recording of this webinar can be provided on request.

We are performing maintenance on the Apollo applications today. They will not be available for annotation during 8am and 5pm US Eastern time. We will send an email when the maintenance is complete.

Our next i5k Workspace webinar will be August 18th at 1 pm MDT.

Title: Manual annotation using the Apollo software

The webinar will last 1 hour, and will cover Apollo functionality for editing annotation structure:

• Adding and removing exons;
• Merging and splitting gene models;
• Adjusting UTRs;
• Adding isoforms based on RNA-Seq evidence;
• Changing the sequence start, stop, and open reading frame;
• Working with splice sites;
• Genome sequence alterations;
• Adding non-coding features.

Click this link to view the event in your time zone: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Apollo+webinar&iso=20200818T13&p1=75&ah=1

This event requires registration. Register for the webinar here: https://www.zoomgov.com/meeting/register/vJIsfuyhpjgvE03HXiA4AEg7Gj_PsdQKYSY

A recording of this webinar can be provided on request.

Two new organisms are available at the i5k Workspace: Odontomachus brunneus and Osmia lignaria.

Odontomachus brunneus resources:

• Organism page: https://i5k.nal.usda.gov/odontomachus-brunneus
• Apollo/Jbrowse: https://apollo.nal.usda.gov/apollo/Odontomachus%20brunneus/jbrowse/
• Gene pages: https://i5k.nal.usda.gov/search/site/Odontomachus%20brunneus%20AND%20gene

Osmia lignaria resources:

• Organism page: https://i5k.nal.usda.gov/osmia-lignaria
• Apollo/Jbrowse: https://apollo.nal.usda.gov/apollo/Osmia%20lignaria/jbrowse/
• Gene pages: https://i5k.nal.usda.gov/search/site/Osmia%20lignaria%20AND%20gene

General information:

• BLAST: https://i5k.nal.usda.gov/webapp/blast/ 
• Apollo registration for all organisms: https://i5k.nal.usda.gov/web-apollo-registration